The following are some basic commands that are necessary to interact with files, folders, and applications on the Linux CLI (command line). Keep in mind that capitalization counts!
This list is not comprehensive and is just meant to be a starting point.
There are several online Linux resources you may find helpful, including Explain Shell and Learn Shell..
cat [filename]
cd [directoryname] To go up a level: cd ..
Copies files or directories to another location. For example, moving a file or directory to your /scratch location. Use -r to recursively copy directories.
cp (-r) sourcefile1 or directory .. targetdirectory
du -h /home/chad.julius --max-depth=1
less filename
Lists the contents of the current directory. 'll' will provide a long list.
ls [options] To view hidden files: ls -a
man [command]
mkdir [directoryname]
mv sourcefile1 sourcefile2 .. targetfile/directory
pwd
rm [options] file1 file2 ...
rmdir [directoryname]
scp (-r) sourcefile1 or directory chad.julius@pt:/targetdirectory
tail filename
The above command line examples will give you a great start on navigation, manipulating files and directories, and other basic commands. They are probably the most used examples when it comes to basic command line usage.